[4]EBI [5]Databases [6]Protein Databases [7]SAS [8]About [9]Contact us [10][IMG] FASTA alignment for PDB entry 1tsr(B) - coloured by no. of contacts to ligand Below are the FASTA results from a search of the sequence of PDB entry 1tsr(B) against all [11][IMG] protein sequences in the PDB. Identical sequences are grouped together and represented by Struct a single 'consensus' sequence (asterisked) onto which all relevant annotations are mapped. [12][IMG] The number of sequences represented by each consensus sequence is shown by the '×n' on the FASTA right of the alignment. Use the box below to modify the annotations shown on the alignment. At the bottom of the page are given the FASTA stats for all the sequences. There you can exclude any sequences from the alignment. The search returned 100 unique sequences (including 12 consensus sequences) giving 115 sequence matches in all. The 95 sequences excluded from the alignment are listed at the end. Modify alignment: Annotate by: [[13]________________________________] [14][ APPLY ] Number: [[15]________________________] Show secondary structure: Yes [16]( ) No [17]( ) 1 2 3 4 5 6 12345678901234567890123456789012345678901234567890123456789012345 Protein name ---------+---------+---------+---------+---------+---------+----- ------------ [18]1tsr:A ------sssvpsqktyqgsygfrlgflhsgtaksvtctyspalnkmfcqlaktcpvqlwvdstpp P53 core domain in complex with DNA [19]1tup:A ------sssvpsqktyqgsygfrlgflhsgtaksvtctyspalnkmfcqlaktcpvqlwvdstpp Tumor suppressor p53 complexed with DNA [20]2ac0:A ------sssvpsqktyqgsygfrlgflhsgtaksvtctyspalnkmfcqlaktcpvqlwvdstpp Structural basis of DNA recognition by p53 tetramers ... [21]2h1l:M ---splsssvpsqktyqgsygfrlgflhsgtaksvtctyspalnkmfcqlaktcpvqlwvdstpp The structure of the oncoprotein sv40 large t antigen and ... [22]2xwr:A ---wplsssvpsqktyqgsygfrlgflhsgtaksvtctyspalnkmfcqlaktcpvqlwvdstpp Crystal structure of the DNA-binding domain of human p53 ... [23]3kmd:A ----plsssvpsqktyqgsygfrlgflhsgtaksvtctyspalnkmfcqlaktcpvqlwvdstpp Crystal structure of the p53 core domain bound to a full ... [24]2fej:A ------sssvpsqktyqgsygfrlgflhsgtaksvtctyspalnkmfcqlaktcpvqlwvdstpp Solution structure of human p53 DNA binding domain. [25]1gzh:C -------ssvpsqktyqgsygfrlgflhsgtaksvtctyspalnkmfcqlaktcpvqlwvdstpp Crystal structure of the brct domains of human 53bp1 bound ... [26]1kzy:A -------ssvpsqktyqgsygfrlgflhsgtaksvtctyspalnkmfcqlaktcpvqlwvdstpp Crystal structure of the 53bp1 brct region complexed to ... [27]2ady:A -------ssvpsqktyqgsygfrlgflhsgtaksvtctyspalnkmfcqlaktcpvqlwvdstpp Structural basis of DNA recognition by p53 tetramers ... [28]2ahi:A -------ssvpsqktyqgsygfrlgflhsgtaksvtctyspalnkmfcqlaktcpvqlwvdstpp Structural basis of DNA recognition by p53 tetramers ... [29]2pcx:A hhhhhhsssvpsqktyqgsygfrlgflhsgtaksvtctyspalnkmfcqlaktcpvqlwvdstpp Crystal structure of p53dbd(r282q) at 1.54-angstrom ... [30]2ocj:A --------svpsqktyqgsygfrlgflhsgtaksvtctyspalnkmfcqlaktcpvqlwvdstpp Human p53 core domain in the absence of DNA [31]2ata:A --------svpsqktyqgsygfrlgflhsgtaksvtctyspalnkmfcqlaktcpvqlwvdstpp Structural basis of DNA recognition by p53 tetramers ... [32]2qxa:A --------svpsqktyqgsygfrlgflhsgtaksvtctyspalnkmfcqlaktcpvqlwvdstpp Human p53 core domain mutant v157f [33]2qxb:A --------svpsqktyqgsygfrlgflhsgtaksvtctyspalnkmfcqlaktcpvqlwvdstpp Human p53 core domain mutant n235k [34]2qxc:A --------svpsqktyqgsygfrlgflhsgtaksvtctyspalnkmfcqlaktcpvqlwvdstpp Human p53 core domain mutant n239y [35]2qvq:A ------sssvpsqktyqgsygfrlgflhsgtaksvtctyspalnkmfcqlaktcpvqlwvdstpp Human p53 core domain mutant v157f/n235k/n239y [36]1ycs:A ---------vpsqktyqgsygfrlgflhsgtaksvtctyspalnkmfcqlaktcpvqlwvdstpp P53-53bp2 complex [37]3d0a:A --------svpsqktyqgsygfrlgflhsgtaksvtctyspalnkmfcqlaktcpvqlwvdstpp Human p53 core domain with hot spot mutation r249s and ... [38]3d07:A ------sssvpsqktyqgsygfrlgflhsgtaksvtctyspalnkmfcqlaktcpvqlwvdstpp Human p53 core domain with hot spot mutation r249s (iii) 1 1 1 1 7 8 9 0 1 2 3 67890123456789012345678901234567890123456789012345678901234567890 Protein name ----+---------+---------+---------+---------+---------+---------+ ------------ [39]1tsr:A pgtrvramaiykqsqhmtevvrrcphhercsdsdglappqhlirvegnlrveylddrntfrhsvv P53 core domain in complex with DNA [40]1tup:A pgtrvramaiykqsqhmtevvrrcphhercsdsdglappqhlirvegnlrveylddrntfrhsvv Tumor suppressor p53 complexed with DNA [41]2ac0:A pgtrvramaiykqsqhmtevvrrcphhercsdsdglappqhlirvegnlrveylddrntfrhsvv Structural basis of DNA recognition by p53 tetramers ... [42]2h1l:M pgtrvramaiykqsqhmtevvrrcphhercsdsdglappqhlirvegnlrveylddrntfrhsvv The structure of the oncoprotein sv40 large t antigen and ... [43]2xwr:A pgtrvramaiykqsqhmtevvrrcphhercsdsdglappqhlirvegnlrveylddrntfrhsvv Crystal structure of the DNA-binding domain of human p53 ... [44]3kmd:A pgtrvramaiykqsqhmtevvrrcphhercsdsdglappqhlirvegnlrveylddrntfrhsvv Crystal structure of the p53 core domain bound to a full ... [45]2fej:A pgtrvramaiykqsqhmtevvrrcphhercsdsdglappqhlirvegnlrveylddrntfrhsvv Solution structure of human p53 DNA binding domain. [46]1gzh:C pgtrvramaiykqsqhmtevvrrcphhercsdsdglappqhlirvegnlrveylddrntfrhsvv Crystal structure of the brct domains of human 53bp1 bound ... [47]1kzy:A pgtrvramaiykqsqhmtevvrrcphhercsdsdglappqhlirvegnlrveylddrntfrhsvv Crystal structure of the 53bp1 brct region complexed to ... [48]2ady:A pgtrvramaiykqsqhmtevvrrcphhercsdsdglappqhlirvegnlrveylddrntfrhsvv Structural basis of DNA recognition by p53 tetramers ... [49]2ahi:A pgtrvramaiykqsqhmtevvrrcphhercsdsdglappqhlirvegnlrveylddrntfrhsvv Structural basis of DNA recognition by p53 tetramers ... [50]2pcx:A pgtrvramaiykqsqhmtevvrrcphhercsdsdglappqhlirvegnlrveylddrntfrhsvv Crystal structure of p53dbd(r282q) at 1.54-angstrom ... [51]2ocj:A pgtrvramaiykqsqhmtevvrrcphhercsdsdglappqhlirvegnlrveylddrntfrhsvv Human p53 core domain in the absence of DNA [52]2ata:A pgtrvramaiykqsqhmtevvrrcphhercsdsdglappqhlirvegnlrveylddrntfrhsvv Structural basis of DNA recognition by p53 tetramers ... [53]2qxa:A pgtrframaiykqsqhmtevvrrcphhercsdsdglappqhlirvegnlrveylddrntfrhsvv Human p53 core domain mutant v157f [54]2qxb:A pgtrvramaiykqsqhmtevvrrcphhercsdsdglappqhlirvegnlrveylddrntfrhsvv Human p53 core domain mutant n235k [55]2qxc:A pgtrvramaiykqsqhmtevvrrcphhercsdsdglappqhlirvegnlrveylddrntfrhsvv Human p53 core domain mutant n239y [56]2qvq:A pgtrframaiykqsqhmtevvrrcphhercsdsdglappqhlirvegnlrveylddrntfrhsvv Human p53 core domain mutant v157f/n235k/n239y [57]1ycs:A pgtrvramaiykqsqhmtevvrrcphhercsdsdglappqhlirvegnlrveylddrntfrhsvv P53-53bp2 complex [58]3d0a:A pgtrvramaiykqsqrmtevvrrcphhercsdsdglappqhlirvegnlrveylddrntfrhsvv Human p53 core domain with hot spot mutation r249s and ... [59]3d07:A pgtrvramaiykqsqhmtevvrrcphhercsdsdglappqhlirvegnlrveylddrntfrhsvv Human p53 core domain with hot spot mutation r249s (iii) 1 1 1 1 1 1 4 5 6 7 8 9 12345678901234567890123456789012345678901234567890123456789012345 Protein name ---------+---------+---------+---------+---------+---------+----- ------------ [60]1tsr:A vpyeppevgsdcttihynymcnsscmggmnrrpiltiitledssgnllgrnsfevrvcacpgrdr P53 core domain in complex with DNA [61]1tup:A vpyeppevgsdcttihynymcnsscmggmnrrpiltiitledssgnllgrnsfevrvcacpgrdr Tumor suppressor p53 complexed with DNA [62]2ac0:A vpyeppevgsdcttihynymcnsscmggmnrrpiltiitledssgnllgrnsfevrvcacpgrdr Structural basis of DNA recognition by p53 tetramers ... [63]2h1l:M vpyeppevgsdcttihynymcnsscmggmnrrpiltiitledssgnllgrnsfevrvcacpgrdr The structure of the oncoprotein sv40 large t antigen and ... [64]2xwr:A vpyeppevgsdcttihynymcnsscmggmnrrpiltiitledssgnllgrnsfevrvcacpgrdr Crystal structure of the DNA-binding domain of human p53 ... [65]3kmd:A vpyeppevgsdcttihynymcnsscmggmnrrpiltiitledssgnllgrnsfevrvcacpgrdr Crystal structure of the p53 core domain bound to a full ... [66]2fej:A vpyeppevgsdcttihynymcnsscmggmnrrpiltiitledssgnllgrnsfevrvcacpgrdr Solution structure of human p53 DNA binding domain. [67]1gzh:C vpyeppevgsdcttihynymcnsscmggmnrrpiltiitledssgnllgrnsfevrvcacpgrdr Crystal structure of the brct domains of human 53bp1 bound ... [68]1kzy:A vpyeppevgsdcttihynymcnsscmggmnrrpiltiitledssgnllgrnsfevrvcacpgrdr Crystal structure of the 53bp1 brct region complexed to ... [69]2ady:A vpyeppevgsdcttihynymcnsscmggmnrrpiltiitledssgnllgrnsfevrvcacpgrdr Structural basis of DNA recognition by p53 tetramers ... [70]2ahi:A vpyeppevgsdcttihynymcnsscmggmnrrpiltiitledssgnllgrnsfevrvcacpgrdr Structural basis of DNA recognition by p53 tetramers ... [71]2pcx:A vpyeppevgsdcttihynymcnsscmggmnrrpiltiitledssgnllgrnsfevrvcacpgrdq Crystal structure of p53dbd(r282q) at 1.54-angstrom ... [72]2ocj:A vpyeppevgsdcttihynymcnsscmggmnrrpiltiitledssgnllgrnsfevrvcacpgrdr Human p53 core domain in the absence of DNA [73]2ata:A vpyeppevgsdcttihynymcnsscmggmnrrpiltiitledssgnllgrnsfevrvcacpgrdr Structural basis of DNA recognition by p53 tetramers ... [74]2qxa:A vpyeppevgsdcttihynymcnsscmggmnrrpiltiitledssgnllgrnsfevrvcacpgrdr Human p53 core domain mutant v157f [75]2qxb:A vpyeppevgsdcttihykymcnsscmggmnrrpiltiitledssgnllgrnsfevrvcacpgrdr Human p53 core domain mutant n235k [76]2qxc:A vpyeppevgsdcttihynymcysscmggmnrrpiltiitledssgnllgrnsfevrvcacpgrdr Human p53 core domain mutant n239y [77]2qvq:A vpyeppevgsdcttihykymcysscmggmnrrpiltiitledssgnllgrnsfevrvcacpgrdr Human p53 core domain mutant v157f/n235k/n239y [78]1ycs:A vpyeppevgsdcttihynymcnsscmggmnrrpiltiitledssgnllgrnsfevrvcacpgrdr P53-53bp2 complex [79]3d0a:A vpyeppevgsdcttihynymcnsscmggmnrspiltiitledssgnllgrnsfevrvcacpgrdr Human p53 core domain with hot spot mutation r249s and ... [80]3d07:A vpyeppevgsdcttihynymcnsscmggm-rspiltiitledssgnllgrnsfevrvcacpgrdr Human p53 core domain with hot spot mutation r249s (iii) 2 2 0 1 678901234567890 Protein name ----+---------+ ------------ [81]1tsr:A rteeenl-------- P53 core domain in complex with DNA [82]1tup:A rteeenl-------- Tumor suppressor p53 complexed with DNA [83]2ac0:A rteeenlrkk----- Structural basis of DNA recognition by p53 tetramers ... [84]2h1l:M rteeenl-------- The structure of the oncoprotein sv40 large t antigen and ... [85]2xwr:A rteeenl-------- Crystal structure of the DNA-binding domain of human p53 ... [86]3kmd:A rteeenlrk------ Crystal structure of the p53 core domain bound to a full ... [87]2fej:A rteeenlrkkgephh Solution structure of human p53 DNA binding domain. [88]1gzh:C rteeenlr------- Crystal structure of the brct domains of human 53bp1 bound ... [89]1kzy:A rteeenl-------- Crystal structure of the 53bp1 brct region complexed to ... [90]2ady:A rteeenlrkk----- Structural basis of DNA recognition by p53 tetramers ... [91]2ahi:A rteeenlrkkg---- Structural basis of DNA recognition by p53 tetramers ... [92]2pcx:A rteeenlrkk----- Crystal structure of p53dbd(r282q) at 1.54-angstrom ... [93]2ocj:A rteeenl-------- Human p53 core domain in the absence of DNA [94]2ata:A rteeenlrkk----- Structural basis of DNA recognition by p53 tetramers ... [95]2qxa:A rteeenl-------- Human p53 core domain mutant v157f [96]2qxb:A rteeenl-------- Human p53 core domain mutant n235k [97]2qxc:A rteeenl-------- Human p53 core domain mutant n239y [98]2qvq:A rteeenl-------- Human p53 core domain mutant v157f/n235k/n239y [99]1ycs:A rteee---------- P53-53bp2 complex [100]3d0a:A rteeenlrk------ Human p53 core domain with hot spot mutation r249s and ... [101]3d07:A rteeen--------- Human p53 core domain with hot spot mutation r249s (iii) Residue colours: black = 0, purple = 1, blue = 2, green = 3, orange = 4, red = 5 or more contacts. Sequence listing The listing below shows the FASTA statistics for the PDB entries that matched PDB entry 1tsr(B). Ditto marks indicate identical sequences represented by a single representative sequence in the alignment above. The representative is asterisked and the names of all its duplicate sequences are indented to the right. Structures whose names are given in purple are those that are annotated above. Note that annotations are only transferred to the submitted sequence from sequences that have at least a 30% sequence identity and and overlap of at least 80 residues (or 3/4 of the length of the submitted sequence, if this is shorter), or E-value < 0.001. Use the checkboxes to the left of the PDB codes to exclude any sequences from the alignment (or to add back any sequences in the Excluded list). Then click the SELECT button at the bottom of the page to redisplay the alignment. Aligned sequences Smith- Waterman %-tage a.a. Seq E- PDB score identity overlap len z-score value code Protein name 1. - - - 196 - - [102]1tsr:A P53 core domain in complex with DNA 2. 1371 100.0% 196 196 1855.8 1.8e-96 [103][ ] [104]1tup:A Tumor suppressor p53 complexed with DNA 3. 1371 100.0% 196 199 1855.7 1.9e-96 [105][ ] [106]2ac0:A Structural basis of DNA recognition by p53 tetramers (complex i) 4. 1371 100.0% 196 199 1855.7 1.9e-96 [107][ ] [108]2h1l:M The structure of the oncoprotein sv40 large t antigen and p53 tumor suppressor complex 5. 1371 100.0% 196 199 1855.7 1.9e-96 [109][ ] [110]2xwr:A Crystal structure of the DNA-binding domain of human p53 wit extended n terminus 6. 1371 100.0% 196 200 1855.7 1.9e-96 [111][ ] [112]3kmd:A Crystal structure of the p53 core domain bound to a full con site as a self-assembled tetramer 7. 1371 100.0% 196 204 1855.6 1.9e-96 [113][ ] [114]2fej:A Solution structure of human p53 DNA binding domain. 8. 1366 100.0% 195 196 1849.1 4.4e-96 [115][ ] [116]1gzh:C Crystal structure of the brct domains of human 53bp1 bound to the p53 tumor supressor 9. 1366 100.0% 195 195 1849.1 4.4e-96 [117][ ] [118]1kzy:A Crystal structure of the 53bp1 brct region complexed to tumor suppressor p53 10. 1366 100.0% 195 198 1849.0 4.4e-96 [119][ ] [120]2ady:A Structural basis of DNA recognition by p53 tetramers (complex iv) 11. 1366 100.0% 195 199 1849.0 4.4e-96 [121][ ] [122]2ahi:A Structural basis of DNA recognition by p53 tetramers (complex iii) 12. 1365 99.5% 196 205 1847.4 5.4e-96 [123][ ] [124]2pcx:A Crystal structure of p53dbd(r282q) at 1.54-angstrom resolution 13. 1361 100.0% 194 194 1842.4 1e-95 [125][ ] [126]2ocj:A Human p53 core domain in the absence of DNA 14. 1361 100.0% 194 197 1842.3 1e-95 [127][ ] [128]2ata:A Structural basis of DNA recognition by p53 tetramers (complex ii) 15. 1355 99.5% 194 194 1834.3 2.9e-95 [129][ ] [130]2qxa:A Human p53 core domain mutant v157f 16. 1354 99.5% 194 194 1832.9 3.5e-95 [131][ ] [132]2qxb:A Human p53 core domain mutant n235k 17. 1352 99.5% 194 194 1830.2 4.9e-95 [133][ ] [134]2qxc:A Human p53 core domain mutant n239y 18. 1349 98.5% 196 196 1826.1 8.3e-95 [135][ ] [136]2qvq:A Human p53 core domain mutant v157f/n235k/n239y 19. 1344 100.0% 191 191 1819.5 1.9e-94 [137][ ] [138]1ycs:A P53-53bp2 complex 20. 1343 99.0% 194 196 1818.0 2.4e-94 [139][ ] [140]3d0a:A Human p53 core domain with hot spot mutation r249s and second site suppressor mutation h168r in sequence-specific complex with DNA 21. 1339 99.0% 195 194 1812.6 4.7e-94 [141][ ] [142]3d07:A Human p53 core domain with hot spot mutation r249s (iii) Number of sequences: 21 Excluded sequences Smith- Waterman %-tage a.a. Seq E- PDB score identity overlap len z-score value code Protein name 1. 1338 97.9% 194 195 1811.3 5.6e-94 [143][ ] [144]1uol:A Crystal structure of the human p53 core domain mutant m133l/v203a/n239y/n268d at 1.9 a resolution. 2. 1334 98.5% 196 197 1805.8 1.1e-93 [145][ ] [146]3igl:A Diversity in DNA recognition by p53 revealed by crystal stru with hoogsteen base pairs (p53-DNA complex 1) 3. 1333 97.4% 194 195 1804.5 1.3e-93 [147][ ] [148]2j1w:A Human p53 core domain mutant m133l-v143a-v203a-n239y-n268d 4. 1331 97.4% 194 195 1801.8 1.9e-93 [149][ ] [150]2bim:A Human p53 core domain mutant m133l-v203a-n239y-n268d-r273h 5. 1331 97.4% 194 195 1801.8 1.9e-93 [151][ ] [152]2j1z:A Human p53 core domain mutant m133l-v203a-n239y-n268d-f270l 6. 1329 99.0% 193 191 1799.2 2.6e-93 [153][ ] [154]2ybg:A Structure of lys120-acetylated p53 core domain 7. 1329 98.5% 195 195 1799.1 2.7e-93 [155][ ] [156]3kz8:A Diversity in DNA recognition by p53 revealed by [2]spacer [3]spacer crystal stru with hoogsteen base pairs (p53-DNA complex 3) 8. 1328 96.9% 194 196 1797.7 3.2e-93 [157][ ] [158]2wgx:A Human p53 core domain mutant m133l-v203a-y236f-n239y-t253i- n268d 9. 1327 97.4% 194 195 1796.4 3.8e-93 [159][ ] [160]2j1x:A Human p53 core domain mutant m133l-v203a-y220c-n239y-n268d 10. 1327 97.4% 194 195 1796.4 3.8e-93 [161][ ] [162]2j20:A Human p53 core domain mutant m133l-v203a-n239y-n268d-r273c 11. 1327 97.4% 194 195 1796.4 3.8e-93 [163][ ] [164]2vuk:A ^* Structure of the p53 core domain mutant y220c bound to the stabilizing small-molecule drug phikan083 12. " " " " " " = [165]2x0u:A ^* Structure of the p53 core domain mutant y220c bound to a 2- amino substituted benzothiazole scaffold 13. " " " " " " = [166]2x0w:A ^* Structure of the p53 core domain mutant y220c bound to 5,6- dimethoxy-2-methylbenzothiazole 14. " " " " " " = [167]4agl:A ^* Structure of the p53 core domain mutant y220c bound to the stabilizing small molecule phikan784 15. 1327 97.4% 194 196 1796.4 3.8e-93 [168][ ] [169]4ago:A ^* Structure of the p53 core domain mutant y220c bound to the stabilizing small molecule phikan5174 16. " " " " " " = [170]4agp:A ^* Structure of the p53 core domain mutant y220c bound to the stabilizing small molecule phikan5176 17. 1327 97.4% 194 195 1796.4 3.8e-93 [171][ ] [172]4agq:A Structure of the p53 core domain mutant y220c bound to the stabilizing small molecule phikan5196 18. 1327 97.4% 194 197 1796.3 3.8e-93 [173][ ] [174]4agm:A ^* Structure of the p53 core domain mutant y220c bound to the stabilizing small molecule phikan5086 19. " " " " " " = [175]4agn:A ^* Structure of the p53 core domain mutant y220c bound to the stabilizing small molecule phikan5116 20. 1316 97.4% 196 197 1781.5 2.5e-92 [176][ ] [177]3igk:A Diversity in DNA recognition by p53 revealed by crystal stru with hoogsteen base pairs (p53-DNA complex 2) 21. 1297 96.4% 194 193 1755.9 6.7e-91 [178][ ] [179]2x0v:A Structure of the p53 core domain mutant y220c bound to 4-( trifluoromethyl)benzene-1,2-diamine 22. 1293 95.9% 195 192 1750.6 1.3e-90 [180][ ] [181]2j1y:A Human p53 core domain mutant m133l-v203a-n239y-g245s-n268d 23. 1274 94.8% 193 188 1725.0 3.5e-89 [182][ ] [183]2j21:A Human p53 core domain mutant m133l-v203a-n239y-n268d-r282w 24. 1262 94.8% 194 188 1708.8 2.8e-88 [184][ ] [185]3d09:A Human p53 core domain with hot spot mutation r249s and second-site suppressor mutations h168r and t123a 25. 1252 93.4% 196 233 1694.0 1.9e-87 [186][ ] [187]3q01:A An induced fit mechanism regulates p53 DNA binding kinetics sequence specificity 26. 1252 93.4% 196 234 1694.0 1.9e-87 [188][ ] [189]3q05:A ^* An induced fit mechanism regulates p53 DNA binding kinetics sequence specificity 27. " " " " " " = [190]3ts8:A ^* Crystal structure of a multidomain human p53 tetramer bound natural cdkn1a(p21) p53-response element 28. 1242 93.3% 194 231 1680.6 1.1e-86 [191][ ] [192]3q06:A An induced fit mechanism regulates p53 DNA binding kinetics sequence specificity 29. 1234 93.3% 193 186 1671.1 3.6e-86 [193][ ] [194]2bio:A Human p53 core domain mutant m133l-v203a-n239y-r249s-n268d 30. 1214 88.2% 195 196 1643.7 1.2e-84 [195][ ] [196]2p52:A Mouse p53 DNA-binding domain in zinc-free oxidized state 31. 1203 91.8% 194 185 1629.2 7.7e-84 [197][ ] [198]2bip:A Human p53 core domain mutant m133l-h168r-v203a-n239y-r249s- n268d 32. 1198 91.2% 194 185 1622.5 1.8e-83 [199][ ] [200]2biq:A Human p53 core domain mutant t123a-m133l-h168r-v203a-n239y- r249s-n268d 33. 1192 88.4% 190 194 1614.1 5.4e-83 [201][ ] [202]3exl:A Crystal structure of a p53 core tetramer bound to DNA 34. 1185 88.4% 189 194 1604.6 1.8e-82 [203][ ] [204]3exj:A Crystal structure of a p53 core tetramer bound to DNA 35. 1178 88.8% 187 187 1595.4 5.9e-82 [205][ ] [206]2ioi:A ^* Crystal structure of the mouse p53 core domain at 1.55 a 36. " " " " " " = [207]2iom:A ^* Mouse p53 core domain soaked with 2-propanol 37. " " " " " " = [208]2ioo:A ^* Crystal structure of the mouse p53 core domain 38. 1170 88.7% 186 186 1584.6 2.4e-81 [209][ ] [210]1hu8:A Crystal structure of the mouse p53 core DNA-binding domain at 2.7a resolution 39. 1144 85.8% 190 188 1549.4 2.1e-79 [211][ ] [212]2geq:A Crystal structure of a p53 core dimer bound to DNA 40. 1238 94.3% 193 183 1536.1 1.2e-78 [213][ ] [214]3d05:A Human p53 core domain with hot spot mutation r249s (ii) 41. 1233 94.2% 191 182 1533.4 1.7e-78 [215][ ] [216]3d08:A Human p53 core domain with hot spot mutation r249s and second-site suppressor mutation h168r 42. 1206 92.7% 192 179 1499.7 1.3e-76 [217][ ] [218]3d06:A Human p53 core domain with hot spot mutation r249s (i) 43. 1195 91.7% 193 183 1469.9 5.8e-75 [219][ ] [220]2bin:A Human p53 core domain mutant m133l-h168r-v203a-n239y-n268d 44. 1242 94.4% 195 187 1130.7 4.5e-56 [221][ ] [222]1gzh:A Crystal structure of the brct domains of human 53bp1 bound to the p53 tumor supressor 45. 816 59.8% 194 198 1106.0 1.1e-54 [223][ ] [224]4g83:A Crystal structure of p73 DNA-binding domain tetramer bound t response-element 46. 816 59.8% 194 202 1105.9 1.1e-54 [225][ ] [226]3vd0:A ^* Structure of p73 DNA binding domain tetramer modulates p73 transactivation 47. " " " " " " = [227]3vd1:A ^* Structure of p73 DNA binding domain tetramer modulates p73 transactivation 48. 816 59.8% 194 203 1105.9 1.1e-54 [228][ ] [229]3vd2:A Structure of p73 DNA binding domain tetramer modulates p73 transactivation 49. 816 59.8% 194 201 1105.9 1.1e-54 [230][ ] [231]4g82:A Crystal structure of p73 DNA-binding domain tetramer bound t response-element 50. 816 59.8% 194 205 1105.8 1.1e-54 [232][ ] [233]4a63:A Crystal structure of the p73-aspp2 complex at 2.6a resolution 51. 805 55.6% 198 233 1090.2 8.1e-54 [234][ ] [235]2rmn:A The solution structure of the p63 DNA-binding domain 52. 796 56.2% 194 195 1079.1 3.4e-53 [236][ ] [237]3qyn:A ^* Structure of p63 DNA binding domain in complex with a 22 bas rich response element containing 2 base pair spacer between sites 53. " " " " " " = [238]3us0:A ^* Structure of p63 DNA binding domain in complex with a 22 bas rich response element containing a two base pair "at" space half sites 54. 778 58.2% 194 204 1054.5 7.9e-52 [239][ ] [240]2xip:A ^* Crystal structure of the DNA binding domain of human tp73 refined at 1.8 a resolution 55. " " " " " " = [241]2xwc:A ^* Crystal structure of the DNA binding domain of human tp73 refined at 1.8 a resolution 56. 777 56.0% 193 193 1053.5 9e-52 [242][ ] [243]3us1:A ^* Structure of p63 DNA binding domain in complex with a 22 bas response element containing a two base pair "gc" spacer bet sites 57. " " " " " " = [244]3us2:A ^* Structure of p63 DNA binding domain in complex with a 19 bas rich response element containing two half sites with a sing pair overlap 58. 774 55.7% 194 192 1049.5 1.5e-51 [245][ ] [246]3qym:A Structure of p63 DNA binding domain in complex with a 10 bas rich response element half site 59. 731 56.5% 177 182 991.7 2.5e-48 [247][ ] [248]3us1:D ^* Structure of p63 DNA binding domain in complex with a 22 bas response element containing a two base pair "gc" spacer bet sites 60. " " " " " " = [249]3us2:B ^* Structure of p63 DNA binding domain in complex with a 19 bas rich response element containing two half sites with a sing pair overlap 61. 91 33.3% 48 196 126.7 3.8 [250][ ] [251]1t4w:A Structural differences in the DNA binding domains of human p53 and its c. Elegans ortholog cep-1: structure of c. Elegans cep-1 62. 91 27.8% 115 287 124.5 5 [252][ ] [253]2xyq:A Crystal structure of the nsp16 nsp10 sars coronavirus comple 63. 91 27.8% 115 286 124.5 5 [254][ ] [255]2xyr:A Crystal structure of the nsp16 nsp10 sars coronavirus comple 64. 91 27.8% 115 285 124.5 5 [256][ ] [257]2xyv:A Crystal structure of the nsp16 nsp10 sars coronavirus comple 65. 91 27.8% 115 292 124.4 5.1 [258][ ] [259]3r24:A Crystal structure of nsp10/nsp16 complex of sars coronavirus possible 66. 86 31.2% 80 117 123.1 6 [260][ ] [261]1d4v:A Crystal structure of trail-dr5 complex 67. 91 36.1% 61 941 117.4 13 [262][ ] [263]3spa:A Crystal structure of human mitochondrial RNA polymerase 68. 81 28.6% 56 129 115.7 15 [264][ ] [265]1o4x:A Ternary complex of the DNA binding domains of the oct1 and sox2 transcription factors with a 19mer oligonucleotide from the hoxb1 regulatory element 69. 81 29.3% 75 149 114.9 17 [266][ ] [267]3f59:A Crystal structure of zu5-ank, the spectrin binding region of erythroid ankyrin 70. 84 22.2% 144 365 113.6 20 [268][ ] [269]3i26:A ^* Structure of bovine torovirus hemagglutinin-esterase 71. " " " " " " = [270]3i27:A ^* Structure of bovine torovirus hemagglutinin-esterase in comp receptor 72. 83 31.1% 45 295 113.5 21 [271][ ] [272]3s5n:A Crystal structure of human 4-hydroxy-2-oxoglutarate aldolase 73. 83 31.1% 45 295 113.5 21 [273][ ] [274]3s5o:A Crystal structure of human 4-hydroxy-2-oxoglutarate aldolase pyruvate 74. 83 21.3% 155 312 113.2 21 [275][ ] [276]3h5c:B X-ray structure of protein z-protein z inhibitor complex 75. 83 28.6% 77 348 112.5 23 [277][ ] [278]3mav:A Crystal structure of plasmodium vivax putative farnesyl pyro synthase (pv092040) 76. 83 28.6% 77 357 112.4 24 [279][ ] [280]2ihi:D Crystal structure of plasmodium vivax putative farnesyl pyrophosphate synthase (pv092040) 77. 74 35.7% 42 70 109.9 32 [281][ ] [282]2gvm:A Crystal structure of hydrophobin hfbi with detergent 78. 74 35.7% 42 72 109.8 33 [283][ ] [284]2fz6:A Crystal structure of hydrophobin hfbi 79. 77 27.6% 76 149 109.5 34 [285][ ] [286]3f59:B Crystal structure of zu5-ank, the spectrin binding region of erythroid ankyrin 80. 77 21.6% 74 164 108.9 37 [287][ ] [288]3mln:E DNA binding domain of early b-cell factor 1 (ebf1) bound to (crystal form ii) 81. 80 25.3% 75 347 108.5 39 [289][ ] [290]3mys:A Crystal structure of plasmodium vivax putative polyprenyl pyrophosphate synthase in complex with geranylgeranyl dipho 82. 80 25.3% 75 347 108.5 39 [291][ ] [292]3ph7:A Crystal structure of plasmodium vivax putative polyprenyl pyrophosphate synthase in complex with geranylgeranyl dipho 83. 77 34.3% 35 177 108.4 39 [293][ ] [294]2jlm:A Structure of a putative acetyltransferase (aciad1637) from acinetobacter baylyi adp1 84. 80 25.3% 75 358 108.3 40 [295][ ] [296]3cc9:B Crystal structure of plasmodium vivax putative polyprenyl pyrophosphate synthase in complex with geranylgeranyl diphosphate 85. 80 28.6% 77 358 108.3 40 [297][ ] [298]3ez3:A ^* Crystal structure of plasmodium vivax geranylgeranylpyrophos synthase pvx_092040 with zoledronate and ipp bound 86. " " " " " " = [299]3ldw:A ^* Crystal structure of plasmodium vivax geranylgeranylpyrophos synthase pvx_092040 with zoledronate and ipp bound 87. 80 28.6% 77 355 108.3 40 [300][ ] [301]3rbm:A Crystal structure of plasmodium vivax geranylgeranylpyrophos synthase complexed with bph -703 88. 80 28.6% 77 358 108.3 40 [302][ ] [303]3ryw:A Crystal structure of p. Vivax geranylgeranyl diphosphate syn complexed with bph-811 89. 80 25.3% 75 360 108.2 40 [304][ ] [305]3mys:B Crystal structure of plasmodium vivax putative polyprenyl pyrophosphate synthase in complex with geranylgeranyl dipho 90. 79 33.9% 56 288 108.2 40 [306][ ] [307]3sqq:A Cdk2 in complex with inhibitor rc-3-96 91. 76 28.8% 73 153 108.0 42 [308][ ] [309]3f59:C Crystal structure of zu5-ank, the spectrin binding region of erythroid ankyrin 92. 76 28.8% 73 153 108.0 42 [310][ ] [311]3kbu:C Crystal structure of the ankyrin binding domain of human ery beta spectrin (repeats 13-15) in complex with the spectrin domain of human erythroid ankyrin (zu5-ank), emts derivativ 93. 76 28.8% 73 157 107.8 43 [312][ ] [313]3kbt:C Crystal structure of the ankyrin binding domain of human ery beta spectrin (repeats 13-15) in complex with the spectrin domain of human erythroid ankyrin (zu5-ank) 94. 76 28.8% 73 156 107.8 42 [314][ ] [315]3kbu:D Crystal structure of the ankyrin binding domain of human ery beta spectrin (repeats 13-15) in complex with the spectrin domain of human erythroid ankyrin (zu5-ank), emts derivativ 95. 79 26.7% 60 328 107.5 45 [316][ ] [317]2yv3:A Crystal structure of aspartate semialdehyde dehydrogenase fr thermophilus hb8 Number of sequences: 95 Select or deselect any sequence by clicking its checkbox. Selection shortcuts : [318][ ] select all/none [319][ ] invert selection Then click [320][ SELECT ] to effect selection changes. References Visible links 1. http://www.ebi.ac.uk/inc/head.html 4. http://www.ebi.ac.uk/ 5. http://www.ebi.ac.uk/Databases/ 6. http://www.ebi.ac.uk/Databases/protein.html 7. http://www.ebi.ac.uk/thornton-srv/databases/sas 8. http://www.ebi.ac.uk/thornton-srv/databases/cgi-bin/pdbsum/GetPage.pl?doc=TRUE&pdbcode=n/a&SAS=TRUE&template=about.html 9. http://www.ebi.ac.uk/thornton-srv/databases/cgi-bin/pdbsum/GetPage.pl?doc=TRUE&pdbcode=n/a&SAS=TRUE&template=contactus.html 10. http://www.ebi.ac.uk/thornton-srv/databases/sas 11. http://www.ebi.ac.uk/thornton-srv/databases/cgi-bin/pdbsum/GetPage.pl?pdbcode=&template=struct.html&SAS=TRUE&u=1115693¶m1=4 12. http://www.ebi.ac.uk/thornton-srv/databases/cgi-bin/sas/GetSAStext.pl?file=fasta.out&type=text&user_id=1115693 18. http://www.ebi.ac.uk/pdbsum/1tsr 19. http://www.ebi.ac.uk/pdbsum/1tup 20. http://www.ebi.ac.uk/pdbsum/2ac0 21. http://www.ebi.ac.uk/pdbsum/2h1l 22. http://www.ebi.ac.uk/pdbsum/2xwr 23. http://www.ebi.ac.uk/pdbsum/3kmd 24. 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http://www.ebi.ac.uk/pdbsum/1ycs 79. http://www.ebi.ac.uk/pdbsum/3d0a 80. http://www.ebi.ac.uk/pdbsum/3d07 81. http://www.ebi.ac.uk/pdbsum/1tsr 82. http://www.ebi.ac.uk/pdbsum/1tup 83. http://www.ebi.ac.uk/pdbsum/2ac0 84. http://www.ebi.ac.uk/pdbsum/2h1l 85. http://www.ebi.ac.uk/pdbsum/2xwr 86. http://www.ebi.ac.uk/pdbsum/3kmd 87. http://www.ebi.ac.uk/pdbsum/2fej 88. http://www.ebi.ac.uk/pdbsum/1gzh 89. http://www.ebi.ac.uk/pdbsum/1kzy 90. http://www.ebi.ac.uk/pdbsum/2ady 91. http://www.ebi.ac.uk/pdbsum/2ahi 92. http://www.ebi.ac.uk/pdbsum/2pcx 93. http://www.ebi.ac.uk/pdbsum/2ocj 94. http://www.ebi.ac.uk/pdbsum/2ata 95. http://www.ebi.ac.uk/pdbsum/2qxa 96. http://www.ebi.ac.uk/pdbsum/2qxb 97. http://www.ebi.ac.uk/pdbsum/2qxc 98. http://www.ebi.ac.uk/pdbsum/2qvq 99. http://www.ebi.ac.uk/pdbsum/1ycs 100. http://www.ebi.ac.uk/pdbsum/3d0a 101. http://www.ebi.ac.uk/pdbsum/3d07 102. http://www.ebi.ac.uk/pdbsum/1tsr 104. http://www.ebi.ac.uk/pdbsum/1tup 106. http://www.ebi.ac.uk/pdbsum/2ac0 108. http://www.ebi.ac.uk/pdbsum/2h1l 110. http://www.ebi.ac.uk/pdbsum/2xwr 112. http://www.ebi.ac.uk/pdbsum/3kmd 114. http://www.ebi.ac.uk/pdbsum/2fej 116. http://www.ebi.ac.uk/pdbsum/1gzh 118. http://www.ebi.ac.uk/pdbsum/1kzy 120. http://www.ebi.ac.uk/pdbsum/2ady 122. http://www.ebi.ac.uk/pdbsum/2ahi 124. http://www.ebi.ac.uk/pdbsum/2pcx 126. http://www.ebi.ac.uk/pdbsum/2ocj 128. http://www.ebi.ac.uk/pdbsum/2ata 130. http://www.ebi.ac.uk/pdbsum/2qxa 132. http://www.ebi.ac.uk/pdbsum/2qxb 134. http://www.ebi.ac.uk/pdbsum/2qxc 136. http://www.ebi.ac.uk/pdbsum/2qvq 138. http://www.ebi.ac.uk/pdbsum/1ycs 140. http://www.ebi.ac.uk/pdbsum/3d0a 142. http://www.ebi.ac.uk/pdbsum/3d07 144. http://www.ebi.ac.uk/pdbsum/1uol 146. http://www.ebi.ac.uk/pdbsum/3igl 148. http://www.ebi.ac.uk/pdbsum/2j1w 150. http://www.ebi.ac.uk/pdbsum/2bim 152. http://www.ebi.ac.uk/pdbsum/2j1z 154. http://www.ebi.ac.uk/pdbsum/2ybg 156. http://www.ebi.ac.uk/pdbsum/3kz8 158. http://www.ebi.ac.uk/pdbsum/2wgx 160. http://www.ebi.ac.uk/pdbsum/2j1x 162. http://www.ebi.ac.uk/pdbsum/2j20 164. http://www.ebi.ac.uk/pdbsum/2vuk 165. http://www.ebi.ac.uk/pdbsum/2x0u 166. http://www.ebi.ac.uk/pdbsum/2x0w 167. http://www.ebi.ac.uk/pdbsum/4agl 169. http://www.ebi.ac.uk/pdbsum/4ago 170. http://www.ebi.ac.uk/pdbsum/4agp 172. http://www.ebi.ac.uk/pdbsum/4agq 174. http://www.ebi.ac.uk/pdbsum/4agm 175. http://www.ebi.ac.uk/pdbsum/4agn 177. http://www.ebi.ac.uk/pdbsum/3igk 179. http://www.ebi.ac.uk/pdbsum/2x0v 181. http://www.ebi.ac.uk/pdbsum/2j1y 183. http://www.ebi.ac.uk/pdbsum/2j21 185. http://www.ebi.ac.uk/pdbsum/3d09 187. http://www.ebi.ac.uk/pdbsum/3q01 189. http://www.ebi.ac.uk/pdbsum/3q05 190. http://www.ebi.ac.uk/pdbsum/3ts8 192. http://www.ebi.ac.uk/pdbsum/3q06 194. http://www.ebi.ac.uk/pdbsum/2bio 196. http://www.ebi.ac.uk/pdbsum/2p52 198. http://www.ebi.ac.uk/pdbsum/2bip 200. http://www.ebi.ac.uk/pdbsum/2biq 202. http://www.ebi.ac.uk/pdbsum/3exl 204. http://www.ebi.ac.uk/pdbsum/3exj 206. http://www.ebi.ac.uk/pdbsum/2ioi 207. http://www.ebi.ac.uk/pdbsum/2iom 208. http://www.ebi.ac.uk/pdbsum/2ioo 210. http://www.ebi.ac.uk/pdbsum/1hu8 212. http://www.ebi.ac.uk/pdbsum/2geq 214. http://www.ebi.ac.uk/pdbsum/3d05 216. http://www.ebi.ac.uk/pdbsum/3d08 218. http://www.ebi.ac.uk/pdbsum/3d06 220. http://www.ebi.ac.uk/pdbsum/2bin 222. http://www.ebi.ac.uk/pdbsum/1gzh 224. http://www.ebi.ac.uk/pdbsum/4g83 226. http://www.ebi.ac.uk/pdbsum/3vd0 227. http://www.ebi.ac.uk/pdbsum/3vd1 229. http://www.ebi.ac.uk/pdbsum/3vd2 231. http://www.ebi.ac.uk/pdbsum/4g82 233. http://www.ebi.ac.uk/pdbsum/4a63 235. http://www.ebi.ac.uk/pdbsum/2rmn 237. http://www.ebi.ac.uk/pdbsum/3qyn 238. http://www.ebi.ac.uk/pdbsum/3us0 240. http://www.ebi.ac.uk/pdbsum/2xip 241. http://www.ebi.ac.uk/pdbsum/2xwc 243. http://www.ebi.ac.uk/pdbsum/3us1 244. http://www.ebi.ac.uk/pdbsum/3us2 246. http://www.ebi.ac.uk/pdbsum/3qym 248. http://www.ebi.ac.uk/pdbsum/3us1 249. http://www.ebi.ac.uk/pdbsum/3us2 251. http://www.ebi.ac.uk/pdbsum/1t4w 253. http://www.ebi.ac.uk/pdbsum/2xyq 255. http://www.ebi.ac.uk/pdbsum/2xyr 257. http://www.ebi.ac.uk/pdbsum/2xyv 259. http://www.ebi.ac.uk/pdbsum/3r24 261. http://www.ebi.ac.uk/pdbsum/1d4v 263. http://www.ebi.ac.uk/pdbsum/3spa 265. http://www.ebi.ac.uk/pdbsum/1o4x 267. http://www.ebi.ac.uk/pdbsum/3f59 269. http://www.ebi.ac.uk/pdbsum/3i26 270. http://www.ebi.ac.uk/pdbsum/3i27 272. http://www.ebi.ac.uk/pdbsum/3s5n 274. http://www.ebi.ac.uk/pdbsum/3s5o 276. http://www.ebi.ac.uk/pdbsum/3h5c 278. http://www.ebi.ac.uk/pdbsum/3mav 280. http://www.ebi.ac.uk/pdbsum/2ihi 282. http://www.ebi.ac.uk/pdbsum/2gvm 284. http://www.ebi.ac.uk/pdbsum/2fz6 286. http://www.ebi.ac.uk/pdbsum/3f59 288. http://www.ebi.ac.uk/pdbsum/3mln 290. http://www.ebi.ac.uk/pdbsum/3mys 292. http://www.ebi.ac.uk/pdbsum/3ph7 294. http://www.ebi.ac.uk/pdbsum/2jlm 296. http://www.ebi.ac.uk/pdbsum/3cc9 298. http://www.ebi.ac.uk/pdbsum/3ez3 299. http://www.ebi.ac.uk/pdbsum/3ldw 301. http://www.ebi.ac.uk/pdbsum/3rbm 303. http://www.ebi.ac.uk/pdbsum/3ryw 305. http://www.ebi.ac.uk/pdbsum/3mys 307. http://www.ebi.ac.uk/pdbsum/3sqq 309. http://www.ebi.ac.uk/pdbsum/3f59 311. http://www.ebi.ac.uk/pdbsum/3kbu 313. http://www.ebi.ac.uk/pdbsum/3kbt 315. http://www.ebi.ac.uk/pdbsum/3kbu 317. http://www.ebi.ac.uk/pdbsum/2yv3